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GPCR computational chemistry prac

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Issue:

Science

 

Written by:

Henry E

 

Date added:

March 26, 2012

 

Level:

 

Grade:

A

 

No of pages / words:

3 / 778

 

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1708 times

 

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Essay content:

So for an inverse agonist this would mean a decreasing the activity of the receptor. The structure of carazolol is shown below: Questions: ? Diagram of GPCR from the view of looking across the membrane with helix 1 on your right: ? Diagram of GPCR from the view of looking down on top (from outside the cell uppermost): ? Q...
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What interactions (i.e. within 5A) does this cholesterol molecule make with the protein and adjacent substructures? The cholesterol molecule makes significant interactions with the following residues; cholesterol (CLR412), ALA59, ILE55, THR73, CYS77, LEU80, VAL81, LEU84, ALA85, ILE112. ? Q. What (primarily) is the nature of these interactions? All of the above listed residues are hydrophobic molecules with aliphatic side-chains (except THR and CYS which both make H-bonds with the cholesterol molecule)...
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